recipe auriclass

AuriClass is a tool for quickly predicting the clade of a Candida auris genome.

Homepage:

https://rivm-bioinformatics.github.io/auriclass/

Developer docs:

https://github.com/RIVM-bioinformatics/auriclass

License:

AGPL / GNU Affero General Public v3

Recipe:

/auriclass/meta.yaml

package auriclass

(downloads) docker_auriclass

versions:

0.5.4-0,  0.5.3-0,  0.5.2-1,  0.5.2-0,  0.5.1-0

depends mash:

>=2

depends mypy:

depends pandas:

>=2

depends pandas-stubs:

depends pip:

depends pyfastx:

depends pytest:

depends python:

>=3.10

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install auriclass

and update with::

   mamba update auriclass

To create a new environment, run:

mamba create --name myenvname auriclass

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/auriclass:<tag>

(see `auriclass/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/auriclass/README.html)