recipe autogenes

Automatic Gene Selection for Bulk Deconvolution.

Homepage:

https://github.com/theislab/AutoGeneS

License:

MIT

Recipe:

/autogenes/meta.yaml

Links:

doi: 10.1016/j.cels.2021.05.006

package autogenes

versions:

1.0.4-0

depends anndata:

>=0.6.22.post1

depends cachetools:

>=3.1.1

depends deap:

>=1.3.0

depends dill:

>=0.3.1.1

depends matplotlib-base:

depends numpy:

>=1.17.2

depends pandas:

>=0.25.1

depends python:

>=3.6

depends scikit-learn:

>=0.21.3

depends scipy:

>=1.3

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install autogenes

and update with::

   mamba update autogenes

To create a new environment, run:

mamba create --name myenvname autogenes

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/autogenes:<tag>

(see `autogenes/tags`_ for valid values for ``<tag>``)

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