recipe autometa

Automated extraction of genomes from shotgun metagenomes

Homepage:

https://github.com/KwanLab/Autometa

Documentation:

https://autometa.readthedocs.io/en/latest/

License:

AGPL / AGPL-3.0

Recipe:

/autometa/meta.yaml

An automated binning pipeline for metagenomes, in particular host-associated and highly complex ones. Miller, I. J.; Rees, E. R.; Ross, J.; Miller, I.; Baxa, J.; Lopera, J.; Kerby, R. L.; Rey, F. E.; Kwan, J. C. Autometa: Automated extraction of microbial genomes from individual shotgun metagenomes. Nucleic Acids Research, 2019. DOI: https://doi.org/10.1093/nar/gkz148

package autometa

(downloads) docker_autometa

Versions:

2.1.0-02.0.3-02.0.2-02.0.1-02.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install autometa

and update with:

conda update autometa

or use the docker container:

docker pull quay.io/biocontainers/autometa:<tag>

(see autometa/tags for valid values for <tag>)

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