recipe b2b-utils

Genomics tools from BASE2BIO

Homepage:

https://github.com/jvolkening/b2b-utils

License:

GPL / GPLv3

Recipe:

/b2b-utils/meta.yaml

This package contains a set of programs and utilities for working with genomic data. Please see the in-program documentation (`--help`) of each individual tool for usage and details. Please note that some tools in this suite utilize dependencies that are not explicity stated in the Conda package. This keeps the install footprint smaller since all users will not use all utilities, but if you receive error messages about missing programs you will need to install those as well. All possible dependencies should be available as Conda packages.

package b2b-utils

Versions:

0.018-0,  0.017-0

Depends:

• perl >=5.32.1,<5.33.0a0 *_perl5

• perl-bioperl

• perl-biox-seq >=0.008006

• perl-dbi

• perl-list-moreutils

• perl-module-build 0.4232.*

• perl-perlio-gzip

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install b2b-utils

and update with:

conda update b2b-utils

or use the docker container:

docker pull quay.io/biocontainers/b2b-utils:<tag>

(see b2b-utils/tags for valid values for <tag>)

Notes

• Can't be noarch or mulled testing fails because perl-dbi dependency is

not pulled in

• Extra packages (bwa, samtools, etc) are included in host deps so that

the full testing suite will be run during building, but they are not added to run-time deps since not all users may need the corresponding utilities. This decision may be revisited in the future.

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/b2b-utils/README.html)