recipe bactopia

Bactopia is a flexible pipeline for complete analysis of bacterial genomes.

Homepage

https://bactopia.github.io/

Developer docs

https://github.com/bactopia/bactopia/

License

MIT

Recipe

/bactopia/meta.yaml

Links

biotools: bactopia, doi: 10.1128/mSystems.00190-20

package bactopia

(downloads) docker_bactopia

Versions
1.7.1-01.7.0-01.6.5-11.6.5-01.6.4-01.6.3-01.6.2-21.6.2-11.6.2-0

1.7.1-01.7.0-01.6.5-11.6.5-01.6.4-01.6.3-01.6.2-21.6.2-11.6.2-01.6.1-01.6.0-11.6.0-01.5.6-01.5.5-01.5.4-11.5.4-01.5.3-01.5.2-01.5.1-01.5.0-01.4.11-11.4.11-01.4.10-01.4.9-01.4.8-01.4.7-01.4.6-01.4.5-01.4.4-01.4.3-01.4.2-01.4.1-01.4.0-01.3.1-01.3.0-01.2.4-01.2.2-01.2.1-01.2.0-01.1.0-11.1.0-01.0.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bactopia

and update with:

conda update bactopia

or use the docker container:

docker pull quay.io/biocontainers/bactopia:<tag>

(see bactopia/tags for valid values for <tag>)

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