recipe badread

A long read simulator that can imitate many types of read problems



GPL3 / GNU General Public License v3 (GPLv3)



package badread

(downloads) docker_badread



depends matplotlib-base:

depends numpy:

depends pip:

depends python:


depends python-edlib:

depends scipy:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install badread

and update with::

   mamba update badread

To create a new environment, run:

mamba create --name myenvname badread

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `badread/tags`_ for valid values for ``<tag>``)

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