recipe bali-phy

Phylogenetics - Bayesian estimation of phylogenies and multiple sequence alignments.

Homepage:

http://www.bali-phy.org

Developer docs:

https://github.com/bredelings/BAli-Phy/

License:

GPL2

Recipe:

/bali-phy/meta.yaml

Links:

doi: 10.1093/bioinformatics/btab129, biotools: bali-phy

package bali-phy

versions:

4.0beta16-1,  4.0beta16-0,  4.0beta15-1,  4.0beta15-0,  4.0beta14-0,  4.0beta13-0,  3.6.0-2,  3.6.0-1,  3.6.0-0

depends boost-cpp:

>=1.83.0

depends cairo:

>=1.18.2,<2.0a0

depends eigen:

>=3.3.7

depends fmt:

>=10

depends fmt:

>=11.0.2,<12.0a0

depends glib:

depends gnuplot:

depends libgcc:

>=13

depends libglib:

>=2.82.2,<3.0a0

depends libstdcxx:

>=13

depends pandoc:

depends perl:

depends python:

>=3.13,<3.14.0a0

depends r-base:

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bali-phy

and update with::

   mamba update bali-phy

To create a new environment, run:

mamba create --name myenvname bali-phy

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bali-phy:<tag>

(see `bali-phy/tags`_ for valid values for ``<tag>``)

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