recipe bam2plot

Plot of coverage from bam file

Homepage:

https://github.com/willros/bam2plot

License:

GPL-3.0-only

Recipe:

/bam2plot/meta.yaml

package bam2plot

versions:

0.3.6-0

depends mappy:

>=2.28

depends mosdepth:

depends polars:

>=0.20.15

depends pyarrow:

depends pyfastx:

depends pysam:

>=0.22.0

depends python:

>=3.10

depends seaborn:

>=0.13.2

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bam2plot

and update with::

   mamba update bam2plot

To create a new environment, run:

mamba create --name myenvname bam2plot

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bam2plot:<tag>

(see `bam2plot/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bam2plot/README.html)