recipe bamhash/1.1

Hash BAM and FASTQ files to verify data integrity

Homepage:

https://github.com/DecodeGenetics/BamHash

License:

GPL-3-0

Recipe:

/bamhash/1.1/meta.yaml

package bamhash

(downloads) docker_bamhash

versions:
1.1-8,  1.1-7,  1.1-6,  1.1-5,  1.1-4,  1.1-3,  1.1-2,  1.1-1,  1.1-0, 

1.1-8,  1.1-7,  1.1-6,  1.1-5,  1.1-4,  1.1-3,  1.1-2,  1.1-1,  1.1-0,  1.0-7,  1.0-6,  1.0-5,  1.0-4,  1.0-3,  1.0-2,  1.0-1,  1.0-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends openssl:

>=3.1.0,<4.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bamhash

and update with::

   mamba update bamhash

To create a new environment, run:

mamba create --name myenvname bamhash

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bamhash:<tag>

(see `bamhash/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bamhash/README.html)