recipe bamscale

BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks

Homepage:

https://github.com/ncbi/BAMscale

License:

Public Domain

Recipe:

/bamscale/meta.yaml

BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.

package bamscale

Versions:

0.0.5-7,  0.0.5-6,  0.0.5-5,  0.0.5-4,  0.0.5-3,  0.0.5-2,  0.0.5-1,  0.0.5-0,  0.0.3-0

Depends:

• bzip2 >=1.0.8,<2.0a0

• htslib >=1.17,<1.18.0a0

• libbigwig >=0.4.7,<0.5.0a0

• libcurl >=7.87.0,<8.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• xz >=5.2.6,<5.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bamscale

and update with:

conda update bamscale

or use the docker container:

docker pull quay.io/biocontainers/bamscale:<tag>

(see bamscale/tags for valid values for <tag>)

Download stats

Link to this page

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