recipe bandage

Bandage - a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Homepage:

https://github.com/rrwick/Bandage

License:

GPL3 / GNU General Public License, version 3

Recipe:

/bandage/meta.yaml

Links:

doi: 10.1093/bioinformatics/btv383

package bandage

(downloads) docker_bandage

versions:

0.8.1-2,  0.8.1-1,  0.8.1-0

depends fonts-conda-ecosystem:

depends libgcc-ng:

>=7.3.0

depends libstdcxx-ng:

>=7.3.0

depends qt:

>=5.12.5

depends xorg-libxrender:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bandage

and update with::

   mamba update bandage

To create a new environment, run:

mamba create --name myenvname bandage

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bandage:<tag>

(see `bandage/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bandage/README.html)