recipe batvi

Detect viral integrations

Homepage:

https://www.comp.nus.edu.sg/~bioinfo/batvi/

License:

GPLv3+

Recipe:

/batvi/meta.yaml

package batvi

versions:

1.04-8,  1.04-7,  1.04-6,  1.04-5,  1.04-4,  1.04-3,  1.04-2,  1.04-1

depends bedtools:

depends blast:

depends bwa:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends openjdk:

depends picard:

depends samtools:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install batvi

and update with::

   mamba update batvi

To create a new environment, run:

mamba create --name myenvname batvi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/batvi:<tag>

(see `batvi/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

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