recipe batvi

Detect viral integrations

Homepage

https://www.comp.nus.edu.sg/~bioinfo/batvi/

License

GPLv3+

Recipe

/batvi/meta.yaml

package batvi

(downloads) docker_batvi

Versions

1.04-1

Depends bedtools

Depends blast

Depends bwa

Depends libgcc-ng

>=4.9

Depends openjdk

Depends picard

Depends samtools

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install batvi

and update with:

conda update batvi

or use the docker container:

docker pull quay.io/biocontainers/batvi:<tag>

(see batvi/tags for valid values for <tag>)