recipe bcbio-rnaseq

Report generation for bcbio-nextgen RNA-seq runs

Homepage:

https://github.com/roryk/bcbio.rnaseq

License:

MIT

Recipe:

/bcbio-rnaseq/meta.yaml

package bcbio-rnaseq

Versions:

1.2.0-3,  1.2.0-2,  1.2.0-1,  1.2.0-0,  1.1.1-1,  1.0.4-1,  1.0.3-1

Depends:

• bioconductor-biomart

• bioconductor-clusterprofiler

• bioconductor-degreport

• bioconductor-deseq2

• bioconductor-edger

• bioconductor-org.hs.eg.db

• bioconductor-org.mm.eg.db

• bioconductor-tximport

• bioconductor-vsn

• openjdk

• r-base 3.3.2*

• r-chbutils

• r-dplyr

• r-ggplot2

• r-hexbin

• r-knitr

• r-matrixstats

• r-pheatmap

• r-quantreg

• r-readr

• r-rmarkdown

• r-sleuth

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bcbio-rnaseq

and update with:

conda update bcbio-rnaseq

or use the docker container:

docker pull quay.io/biocontainers/bcbio-rnaseq:<tag>

(see bcbio-rnaseq/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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