recipe bcbio-variation-recall

Parallel merging, squaring off and ensemble calling for genomic variants

Homepage:

https://github.com/chapmanb/bcbio.variation.recall

License:

MIT

Recipe:

/bcbio-variation-recall/meta.yaml

package bcbio-variation-recall

versions:

0.2.6-1,  0.2.6-0,  0.2.5-0,  0.2.4-0,  0.2.3-0,  0.2.2-0,  0.2.1-0,  0.1.9-1,  0.1.8-1, 

0.2.6-1,  0.2.6-0,  0.2.5-0,  0.2.4-0,  0.2.3-0,  0.2.2-0,  0.2.1-0,  0.1.9-1,  0.1.8-1,  0.1.8-0,  0.1.7-1,  0.1.7-0,  0.1.6-0,  0.1.5-0,  0.1.4-2,  0.1.4-1,  0.1.4-0

depends openjdk:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bcbio-variation-recall

and update with::

   mamba update bcbio-variation-recall

To create a new environment, run:

mamba create --name myenvname bcbio-variation-recall

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bcbio-variation-recall:<tag>

(see `bcbio-variation-recall/tags`_ for valid values for ``<tag>``)

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Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bcbio-variation-recall/README.html)