-
recipe
bcftools
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations.
- Homepage
- License
GPL
- Recipe
- Links
biotools: bcftools, usegalaxy-eu: bcftools_merge, doi: 10.1093/bioinformatics/btp352
-
package
bcftools
¶ -
- Versions
1.11-0
,1.10.2-3
,1.10.2-2
,1.10.2-1
,1.10.2-0
,1.10.1-0
,1.10-0
,1.9-9
,1.9-8
,1.11-0
,1.10.2-3
,1.10.2-2
,1.10.2-1
,1.10.2-0
,1.10.1-0
,1.10-0
,1.9-9
,1.9-8
,1.9-7
,1.9-6
,1.9-5
,1.9-4
,1.9-3
,1.9-2
,1.9-1
,1.8-3
,1.8-2
,1.8-1
,1.8-0
,1.7-0
,1.6-1
,1.6-0
,1.5-3
,1.5-2
,1.5-1
,1.5-0
,1.4.1-0
,1.4-0
,1.3.1-6
,1.3.1-5
,1.3.1-4
,1.3.1-3
,1.3.1-2
,1.3.1-1
,1.3.1-0
,1.3-5
,1.3-4
,1.3-3
,1.3-2
,1.3-1
,1.3-0
,1.2-4
,1.2-3
,1.2-2
,1.2-1
,1.2-0
- Depends
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bcftools
and update with:
conda update bcftools
or use the docker container:
docker pull quay.io/biocontainers/bcftools:<tag>
(see bcftools/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bcftools/README.html)