recipe bcool

BCOOL is a read corrector for NGS sequencing data that align reads on a de Bruijn graph. Version described at ( presented at RECOMB-seq 2018






package bcool

(downloads) docker_bcool



depends bcalm:

depends bgreat:

depends btrim:

depends ntcard:

depends python:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bcool

and update with::

   mamba update bcool

To create a new environment, run:

mamba create --name myenvname bcool

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bcool/tags`_ for valid values for ``<tag>``)

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