recipe beast2

BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences.

Homepage:

http://www.beast2.org

License:

LGPL-2.1-or-later

Recipe:

/beast2/meta.yaml

package beast2

versions:

2.6.3-2,  2.6.3-1,  2.6.3-0,  2.6.2-0,  2.6.1-0,  2.6.0-0,  2.5.0-4,  2.5.0-3,  2.5.0-2, 

2.6.3-2,  2.6.3-1,  2.6.3-0,  2.6.2-0,  2.6.1-0,  2.6.0-0,  2.5.0-4,  2.5.0-3,  2.5.0-2,  2.5.0-1,  2.5.0-0,  2.4.5-3,  2.4.5-2,  2.4.5-1,  2.4.5-0

depends beagle-lib:

depends font-ttf-ubuntu:

depends fontconfig:

depends freetype:

depends openjdk:

8.0.* zulu8*

depends xorg-libxtst:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install beast2

and update with::

   mamba update beast2

To create a new environment, run:

mamba create --name myenvname beast2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/beast2:<tag>

(see `beast2/tags`_ for valid values for ``<tag>``)

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Link to this page

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