behst

downloads

BEHST reads an input dataset of chromosome regions, and intersects them with the chromatin interactions available in the Hi-C dataset. Of these chromosome regions, BEHST selects those that are presentthe regulatory regions of genes of APPRIS, a dataset of principal isoform annotations. We defined these cis-regulatory regions upon the position of their nearest transcription start site of the APPRIS genes’ principal transcripts (obtained through GENCODE), plus an upstream and downstream extension. Afterwards, BEHST takes the genes of the resulting partner loci found in gene regulatory regions, and performs a gene set enrichment analysis on them through g:Profiler. BEHST, finally, outputs the list of the most significant Gene Ontology terms detected by g:Profiler.

Home https://bitbucket.org/hoffmanlab/behst/overview
Versions 0.8, 0.9, 1.4, 1.6, 1.7, 1.8, 1.9
License GPLv2
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/behst

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install behst

and update with:

conda update behst

docker

A Docker container is available at https://quay.io/repository/biocontainers/behst.