recipe bellavista

Python package for interactive visualization of imaging-based spatial transcriptomics.

Homepage:

https://github.com/pkosurilab/BellaVista

License:

MIT

Recipe:

/bellavista/meta.yaml

package bellavista

versions:

0.0.2-1,  0.0.2-0

depends dask-core:

>=2022.02.0

depends dask-image:

depends h5py:

depends imagecodecs:

depends matplotlib-base:

depends mesa-libgl-cos6-x86_64:

depends napari:

depends napari-ome-zarr:

depends numpy:

depends ome-zarr:

>=0.3.0

depends pandas:

depends pyarrow:

depends pyqt:

depends python:

>=3.9

depends scikit-image:

depends shapely:

depends tqdm:

depends zarr:

>=2.8.1,<3

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bellavista

and update with::

   mamba update bellavista

To create a new environment, run:

mamba create --name myenvname bellavista

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bellavista:<tag>

(see `bellavista/tags`_ for valid values for ``<tag>``)

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