recipe bgreat

BGREAT2 is a read mapping tool for NGS sequencing data that align reads on a de Bruijn graph. Preliminary version described at https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1103-9 and used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336)

Homepage:

https://github.com/Malfoy/BGREAT2

License:

AGPL-3.0

Recipe:

/bgreat/meta.yaml

package bgreat

Versions:

2.0.0-4,  2.0.0-3,  2.0.0-2,  2.0.0-1,  2.0.0-0

Depends:

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

Required By:

• bwise

• bcool

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bgreat

and update with:

conda update bgreat

or use the docker container:

docker pull quay.io/biocontainers/bgreat:<tag>

(see bgreat/tags for valid values for <tag>)

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