recipe biasaway

BiasAway: a tool to generate composition-matched background sequences

Homepage:

https://bitbucket.org/CBGR/biasaway

Documentation:

https://biasaway.rtfd.io

License:

GPL / GPLv3

Recipe:

/biasaway/meta.yaml

BiasAway provides user with four models for generating background sequences useful to enrichment analyses. These backgrounds derived from mono- and di- nucleotide shuffled sequences, and genomic sequences matched to the GC content of the target data.

package biasaway

Versions:

3.3.0-0,  3.2.7-0,  3.2.5-0,  3.2.4-0,  3.2.3-0,  2.2.2-0,  2.2.1-0,  2.1.0-0,  2.0.4-0, 

3.3.0-0,  3.2.7-0,  3.2.5-0,  3.2.4-0,  3.2.3-0,  2.2.2-0,  2.2.1-0,  2.1.0-0,  2.0.4-0,  2.0.1-0,  1.0.4-0,  1.0.2-0

Depends:

• biopython

• cyushuffle

• matplotlib-base

• numpy

• python >=3.4

• scikit-learn

• seaborn

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install biasaway

and update with:

conda update biasaway

or use the docker container:

docker pull quay.io/biocontainers/biasaway:<tag>

(see biasaway/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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