recipe bifrost

Highly parallel construction and indexing of colored and compacted de Bruijn graphs

Homepage:

https://github.com/pmelsted/bifrost

License:

BSD / BSD-2-Clause

Recipe:

/bifrost/meta.yaml

Links:

doi: 10.1101/695338

package bifrost

Versions:

1.0.6.5-0,  1.0.6.4-1,  1.0.6.4-0,  1.0.6.2-1,  1.0.6.2-0,  1.0.6-0,  1.0.5-1,  1.0.5-0,  1.0.4-1, 

1.0.6.5-0,  1.0.6.4-1,  1.0.6.4-0,  1.0.6.2-1,  1.0.6.2-0,  1.0.6-0,  1.0.5-1,  1.0.5-0,  1.0.4-1,  1.0.4-0,  1.0.3-0

Depends:

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• pthread-stubs

• zlib >=1.2.11,<1.3.0a0

Required By:

• rnabridge-denovo

• unitig-caller

• komb

• ggcaller

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bifrost

and update with:

conda update bifrost

or use the docker container:

docker pull quay.io/biocontainers/bifrost:<tag>

(see bifrost/tags for valid values for <tag>)

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