recipe bigsi

BItsliced Genomic Signature Index [BIGSI]

Homepage:

https://github.com/Phelimb/BIGSI

License:

MIT / LICENSE

Recipe:

/bigsi/meta.yaml

Links:

doi: 10.1038/s41587-018-0010-1

package bigsi

versions:

0.3.1-0

depends biopython:

depends bitarray:

depends bsddb3:

depends cython:

depends hug:

depends humanfriendly:

depends libdb:

depends mmh3:

depends numpy:

depends python:

>=3

depends pyyaml:

depends redis-py:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bigsi

and update with::

   mamba update bigsi

To create a new environment, run:

mamba create --name myenvname bigsi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bigsi:<tag>

(see `bigsi/tags`_ for valid values for ``<tag>``)

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Link to this page

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