recipe binchicken

Targeted recovery of low abundance metagenome assembled genomes through intelligent coassembly

Homepage:

https://github.com/aroneys/binchicken

Documentation:

https://aroneys.github.io/binchicken

License:

GPL3 / GPL-3.0-or-later

Recipe:

/binchicken/meta.yaml

package binchicken

versions:

0.12.6-1,  0.12.6-0,  0.12.5-1,  0.12.5-0,  0.12.4-0,  0.12.2-0,  0.12.1-0,  0.12.0-1,  0.12.0-0, 

0.12.6-1,  0.12.6-0,  0.12.5-1,  0.12.5-0,  0.12.4-0,  0.12.2-0,  0.12.1-0,  0.12.0-1,  0.12.0-0,  0.11.0-0,  0.10.5-0,  0.10.4-0,  0.10.3-0,  0.10.0-0

depends bird_tool_utils_python:

depends extern:

depends mamba:

1.4.*

depends networkx:

depends parallel:

depends pigz:

depends polars:

1.2.*

depends pyarrow:

depends pyopenssl:

>22.1.0

depends python:

3.10.*

depends ruamel.yaml:

>=0.15.99

depends snakemake-minimal:

>=6.0.5,<8

depends sourmash:

4.8.*

depends sourmash_plugin_branchwater:

0.9.*

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install binchicken

and update with::

   mamba update binchicken

To create a new environment, run:

mamba create --name myenvname binchicken

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/binchicken:<tag>

(see `binchicken/tags`_ for valid values for ``<tag>``)

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