recipe binny

An automated binning algorithm to recover high-quality genomes from complex metagenomic datasets. Note: This is a development version.

Homepage:

https://github.com/a-h-b/binny

License:

GPL / GPL-3.0-or-later

Recipe:

/binny/meta.yaml

package binny

versions:

2.2.18-0

depends bedtools:

2.31.0.*

depends gcc_linux-64:

depends git:

depends hdbscan:

0.8.33.*

depends mantis_pfa:

1.5.5.*

depends networkx:

3.1.0.*

depends opentsne:

1.0.0.*

depends pyarrow:

12.0.1.*

depends python:

>=3.6,<3.11

depends scikit-bio:

0.5.9.*

depends seqkit:

2.5.1.*

depends singularity:

3.8.6.*

depends snakemake:

7.19.0.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install binny

and update with::

   mamba update binny

To create a new environment, run:

mamba create --name myenvname binny

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/binny:<tag>

(see `binny/tags`_ for valid values for ``<tag>``)

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