recipe bio2zarr

Convert bioinformatics data to Zarr

Homepage:

https://sgkit-dev.github.io/bio2zarr/

Developer docs:

https://github.com/sgkit-dev/bio2zarr

License:

Apache-2.0

Recipe:

/bio2zarr/meta.yaml

package bio2zarr

versions:

0.1.6-0,  0.1.5-1,  0.1.5-0

depends click:

depends cyvcf2:

depends humanfriendly:

depends numpy:

>=1.26

depends pandas:

depends python:

>=3.10

depends tabulate:

depends tqdm:

depends tskit:

>=0.6.4

depends zarr:

>=2.17,<3

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bio2zarr

and update with::

   mamba update bio2zarr

To create a new environment, run:

mamba create --name myenvname bio2zarr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bio2zarr:<tag>

(see `bio2zarr/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bio2zarr/README.html)