recipe bio_assembly_refinement

Assembly refinement tools, mostly useful for (but not limited to) pacbio bacterial assemblies

Homepage:

https://github.com/nds/bio_assembly_refinement

License:

GPLv3

Recipe:

/bio_assembly_refinement/meta.yaml

package bio_assembly_refinement

(downloads) docker_bio_assembly_refinement

versions:

0.5.1-2,  0.5.1-1,  0.5.1-0,  0.5.0-1,  0.5.0-0

depends pyfastaq:

>=3.10.0

depends pymummer:

depends python:

>=3

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bio_assembly_refinement

and update with::

   mamba update bio_assembly_refinement

To create a new environment, run:

mamba create --name myenvname bio_assembly_refinement

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bio_assembly_refinement:<tag>

(see `bio_assembly_refinement/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bio_assembly_refinement/README.html)