recipe biobambam

Tools for early stage alignment file processing.

Homepage:

https://gitlab.com/german.tischler/biobambam2

License:

GPL3 / GPL-3.0-or-later

Recipe:

/biobambam/meta.yaml

Links:

biotools: biobambam

package biobambam

(downloads) docker_biobambam

versions:
2.0.185-1,  2.0.185-0,  2.0.183-4,  2.0.183-3,  2.0.183-2,  2.0.183-1,  2.0.183-0,  2.0.182-1,  2.0.182-0, 

2.0.185-1,  2.0.185-0,  2.0.183-4,  2.0.183-3,  2.0.183-2,  2.0.183-1,  2.0.183-0,  2.0.182-1,  2.0.182-0,  2.0.180-1,  2.0.180-0,  2.0.179-1,  2.0.179-0,  2.0.87-2,  2.0.87-1,  2.0.87-0,  2.0.79-0,  2.0.78-0,  2.0.72-0,  2.0.62-0,  2.0.58-0,  2.0.57-0,  2.0.44-0,  2.0.42-0,  2.0.39-0,  2.0.25-0

depends gmp:

>=6.3.0,<7.0a0

depends libgcc:

>=13

depends libmaus2:

>=2.0.813

depends libmaus2:

>=2.0.813,<3.0a0

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends xerces-c:

>=3.2.5,<3.3.0a0

requirements:

additional platforms:
linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install biobambam

and update with::

   mamba update biobambam

To create a new environment, run:

mamba create --name myenvname biobambam

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/biobambam:<tag>

(see `biobambam/tags`_ for valid values for ``<tag>``)

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Render an install-with-bioconda badge with the following MarkDown:

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