recipe biobb_mem

Biobb_mem is the Biobb module for membrane structure analysis.

Homepage:

https://github.com/bioexcel/biobb_mem

Documentation:

http://biobb-mem.readthedocs.io/en/latest/

License:

APACHE / Apache Software License

Recipe:

/biobb_mem/meta.yaml

# biobb_mem

### Introduction Biobb_mem is the Biobb module for membrane structure analysis. Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools. The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb_analysis.readthedocs.io/en/latest/).

### Copyright & Licensing This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728)).

* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/) * (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) Licensed under the [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.

![](https://bioexcel.eu/wp-content/uploads/2019/04/Bioexcell_logo_1080px_transp.png "Bioexcel")

package biobb_mem

(downloads) docker_biobb_mem

versions:

5.0.4-0,  5.0.3-0,  5.0.2-3,  5.0.2-2,  5.0.2-1,  5.0.2-0,  5.0.1-0

depends ambertools:

>=22.5

depends biobb_common:

5.0.0

depends biobb_common:

>=5.0.0,<6.0a0

depends gromacs:

depends libgcc:

>=13

depends lipyphilic:

0.10.0

depends mdahole2:

depends pip:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install biobb_mem

and update with::

   mamba update biobb_mem

To create a new environment, run:

mamba create --name myenvname biobb_mem

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/biobb_mem:<tag>

(see `biobb_mem/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/biobb_mem/README.html)