recipe biocantor

Coordinate Maniuplation and Genome Annotation Data Model

Homepage:

https://github.com/ifiddes/BioCantor

License:

MIT / MIT

Recipe:

/biocantor/meta.yaml

package biocantor

versions:

1.1.0-0,  1.0.0-0

depends biopython:

depends gffutils:

depends marshmallow:

depends marshmallow-dataclass:

depends marshmallow-enum:

depends marshmallow-union:

depends methodtools:

depends pysam:

depends python:

depends pyvcf3:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install biocantor

and update with::

   mamba update biocantor

To create a new environment, run:

mamba create --name myenvname biocantor

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/biocantor:<tag>

(see `biocantor/tags`_ for valid values for ``<tag>``)

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