recipe bioconda-utils

Utilities for building and managing bioconda recipes.

Homepage:

http://bioconda.github.io/build-system.html

Developer docs:

https://github.com/bioconda/bioconda-utils

License:

MIT / MIT

Recipe:

/bioconda-utils/meta.yaml

package bioconda-utils

(downloads) docker_bioconda-utils

versions:
2.15.0-02.14.0-02.13.2-02.13.0-02.12.0-02.11.1-02.11.0-02.10.0-02.9.0-0

2.15.0-02.14.0-02.13.2-02.13.0-02.12.0-02.11.1-02.11.0-02.10.0-02.9.0-02.8.0-02.4.0-02.3.4-02.3.3-02.3.1-02.2.1-02.2.0-02.1.0-02.0.0-01.7.1-01.7.0-01.6.2-01.6.0-01.5.7-01.5.6-01.5.5-01.5.4-01.5.3-01.5.2-01.5.1-01.5.0-01.3.1-01.3.0-01.2.0-01.1.5-01.1.3-01.1.1-01.1.0-01.0.1-01.0.0-00.20.0-00.19.4-00.19.3-00.19.2-00.19.1-00.19.0-00.18.6-00.18.5-00.18.4-00.18.1-00.17.10-00.17.9-00.17.8-00.17.6-00.17.5-00.17.4-00.17.3-00.17.2-00.17.1-00.17.0-00.16.23-00.16.22-10.16.22-00.16.21-00.16.20-00.16.19-00.16.18-00.16.17-00.16.16-00.16.15-00.16.14-00.16.13-00.16.12-00.16.11-00.16.10-10.16.10-00.16.8-30.16.8-20.16.7-10.16.7-00.16.6-00.16.5-00.16.3-00.16.2-00.15.13-00.15.12-00.15.11-00.15.10-10.15.10-00.15.8-00.15.7-00.15.3-00.15.2-00.15.1-00.14.9-00.14.3-00.14.2-00.12.3-10.12.3-00.12.0-00.11.4-10.11.4-00.11.3-00.11.2-00.11.1-0

depends aiofiles:

23.*

depends aioftp:

0.22.*

depends aiohttp:

3.9.*

depends aiohttp-jinja2:

depends aiohttp-security:

depends aiohttp-session:

depends alabaster:

0.7.*

depends anaconda-client:

1.12.*

depends argh:

0.31.*

depends backoff:

2.2.*

depends beautifulsoup4:

4.*

depends boa:

0.17.*

depends boltons:

24.0.*

depends cachetools:

5.3.*

depends celery:

depends colorlog:

6.*

depends conda:

24.3.*

depends conda-build:

24.3.*

depends conda-forge-pinning:

2023.05.06.13.08.41.*

depends conda-index:

0.4.*

depends conda-libmamba-solver:

24.1.*

depends diskcache:

5.*

depends docutils:

depends findutils:

depends galaxy-tool-util:

24.*

depends gidgethub:

5.*

depends git:

2.*

depends gitpython:

3.1.*

depends graphviz:

depends involucro:

1.1.*

depends jinja2:

3.1.*

depends jsonschema:

4.21.*

depends libblas:

* *openblas

depends mamba:

1.5.*

depends markdown:

depends networkx:

3.3.*

depends pandas:

2.2.*

depends platformdirs:

4.*

depends pyaml:

23.12.*

depends pygithub:

depends pyjwt:

>=2.4.0

depends python:

3.10.*

depends regex:

2023.*

depends requests:

2.31.*

depends ruamel.yaml:

0.18.*

depends skopeo:

1.15.*

depends sphinx:

>=4.1

depends sphinx-autodoc-typehints:

depends tabulate:

0.9.*

depends tqdm:

4.66.*

depends yaspin:

2.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconda-utils

and update with::

   mamba update bioconda-utils

To create a new environment, run:

mamba create --name myenvname bioconda-utils

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconda-utils:<tag>

(see `bioconda-utils/tags`_ for valid values for ``<tag>``)

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