- recipe bioconda-utils
Utilities for building and managing bioconda recipes.
- Homepage:
- Documentation:
- Developer docs:
- License:
MIT / MIT
- Recipe:
- package bioconda-utils¶
- versions:
3.4.1-0,3.4.0-0,3.3.2-0,3.3.1-0,3.3.0-0,3.2.0-0,3.0.0-0,2.15.1-0,2.15.0-1,3.4.1-0,3.4.0-0,3.3.2-0,3.3.1-0,3.3.0-0,3.2.0-0,3.0.0-0,2.15.1-0,2.15.0-1,2.15.0-0,2.14.0-0,2.13.2-0,2.13.0-0,2.12.0-0,2.11.1-0,2.11.0-0,2.10.0-0,2.9.0-0,2.8.0-0,2.4.0-0,2.3.4-0,2.3.3-0,2.3.1-0,2.2.1-0,2.2.0-0,2.1.0-0,2.0.0-0,1.7.1-0,1.7.0-0,1.6.2-0,1.6.0-0,1.5.7-0,1.5.6-0,1.5.5-0,1.5.4-0,1.5.3-0,1.5.2-0,1.5.1-0,1.5.0-0,1.3.1-0,1.3.0-0,1.2.0-0,1.1.5-0,1.1.3-0,1.1.1-0,1.1.0-0,1.0.1-0,1.0.0-0,0.20.0-0,0.19.4-0,0.19.3-0,0.19.2-0,0.19.1-0,0.19.0-0,0.18.6-0,0.18.5-0,0.18.4-0,0.18.1-0,0.17.10-0,0.17.9-0,0.17.8-0,0.17.6-0,0.17.5-0,0.17.4-0,0.17.3-0,0.17.2-0,0.17.1-0,0.17.0-0,0.16.23-0,0.16.22-1,0.16.22-0,0.16.21-0,0.16.20-0,0.16.19-0,0.16.18-0,0.16.17-0,0.16.16-0,0.16.15-0,0.16.14-0,0.16.13-0,0.16.12-0,0.16.11-0,0.16.10-1,0.16.10-0,0.16.8-3,0.16.8-2,0.16.7-1,0.16.7-0,0.16.6-0,0.16.5-0,0.16.3-0,0.16.2-0,0.15.13-0,0.15.12-0,0.15.11-0,0.15.10-1,0.15.10-0,0.15.8-0,0.15.7-0,0.15.3-0,0.15.2-0,0.15.1-0,0.14.9-0,0.14.3-0,0.14.2-0,0.12.3-1,0.12.3-0,0.12.0-0,0.11.4-1,0.11.4-0,0.11.3-0,0.11.2-0,0.11.1-0- depends aiofiles:
23.*- depends aioftp:
0.22.*- depends aiohttp:
3.9.*- depends aiohttp-jinja2:
- depends aiohttp-security:
- depends aiohttp-session:
- depends anaconda-client:
1.12.*- depends argh:
0.31.*- depends backoff:
2.2.*- depends beautifulsoup4:
4.*- depends boltons:
24.0.*- depends cachetools:
5.3.*- depends colorlog:
6.*- depends conda:
24.9.*- depends conda-build:
24.7.*- depends conda-forge-pinning:
2024.06.01.05.54.15.*- depends conda-index:
0.5.*- depends conda-libmamba-solver:
24.1.*- depends conda-package-streaming:
0.11.*- depends diskcache:
5.*- depends findutils:
- depends galaxy-tool-util:
24.*- depends gidgethub:
5.*- depends git:
2.*- depends gitpython:
3.1.*- depends involucro:
1.1.*- depends jinja2:
3.1.*- depends jsonschema:
4.22.*- depends libblas:
* *openblas- depends mamba:
1.5.*- depends networkx:
3.3.*- depends pandas:
2.2.*- depends platformdirs:
4.*- depends pyaml:
24.04.*- depends pygithub:
- depends pyjwt:
>=2.4.0- depends python:
3.10.*- depends regex:
2024.*- depends requests:
2.32.*- depends ruamel.yaml:
0.18.*- depends skopeo:
1.15.*- depends tabulate:
0.9.*- depends tqdm:
4.66.*- depends yaspin:
2.*- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconda-utils and update with:: mamba update bioconda-utils
To create a new environment, run:
mamba create --name myenvname bioconda-utils
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconda-utils:<tag> (see `bioconda-utils/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconda-utils/README.html)
