recipe bioconda2biocontainer

BioContainers API client: find biocontainer images for Bioconda packages



PUBLIC-DOMAIN / Public Domain



package bioconda2biocontainer

(downloads) docker_bioconda2biocontainer



depends python:


depends requests:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconda2biocontainer

and update with::

   mamba update bioconda2biocontainer

To create a new environment, run:

mamba create --name myenvname bioconda2biocontainer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconda2biocontainer/tags`_ for valid values for ``<tag>``)

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