recipe bioconductor-absseq

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Homepage

https://bioconductor.org/packages/3.11/bioc/html/ABSSeq.html

License

GPL (>= 3)

Recipe

/bioconductor-absseq/meta.yaml

Links

biotools: absseq

Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.

package bioconductor-absseq

Versions

1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.1-0,  1.32.0-0,  1.22.8-0

Depends

• bioconductor-limma >=3.44.0,<3.45.0

• r-base >=4.0,<4.1.0a0

• r-locfit

Required By

• bioconductor-metaseqr2

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-absseq

and update with:

conda update bioconductor-absseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-absseq:<tag>

(see bioconductor-absseq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-absseq/README.html)