recipe bioconductor-absseq

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/ABSSeq.html

License:

GPL (>= 3)

Recipe:

/bioconductor-absseq/meta.yaml

Links:

biotools: absseq

Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.

package bioconductor-absseq

(downloads) docker_bioconductor-absseq

versions:
1.60.0-0,  1.56.0-0,  1.54.0-0,  1.52.0-0,  1.48.0-0,  1.46.0-0,  1.44.0-1,  1.44.0-0,  1.42.0-0, 

1.60.0-0,  1.56.0-0,  1.54.0-0,  1.52.0-0,  1.48.0-0,  1.46.0-0,  1.44.0-1,  1.44.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.1-0,  1.32.0-0,  1.22.8-0

depends bioconductor-limma:

>=3.62.0,<3.63.0

depends r-base:

>=4.4,<4.5.0a0

depends r-locfit:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-absseq

and update with::

   mamba update bioconductor-absseq

To create a new environment, run:

mamba create --name myenvname bioconductor-absseq

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-absseq:<tag>

(see `bioconductor-absseq/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-absseq/README.html)