Package Recipe 'bioconductor-absseq'

recipe bioconductor-absseq

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Homepage:: https://bioconductor.org/packages/3.16/bioc/html/ABSSeq.html
License:: GPL (>= 3)
Recipe:: /bioconductor-absseq/meta.yaml
Links:: biotools: absseq

Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.

package bioconductor-absseq¶

Versions:

1.52.0-0, 1.48.0-0, 1.46.0-0, 1.44.0-1, 1.44.0-0, 1.42.0-0, 1.40.0-0, 1.38.0-1, 1.38.0-0,

1.52.0-0, 1.48.0-0, 1.46.0-0, 1.44.0-1, 1.44.0-0, 1.42.0-0, 1.40.0-0, 1.38.0-1, 1.38.0-0, 1.36.0-0, 1.34.1-0, 1.32.0-0, 1.22.8-0

Depends:

bioconductor-limma >=3.54.0,<3.55.0
r-base >=4.2,<4.3.0a0
r-locfit

Required By:

bioconductor-metaseqr2

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-absseq

and update with:

conda update bioconductor-absseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-absseq:<tag>

(see bioconductor-absseq/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-absseq/README.html)