recipe bioconductor-ace

Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing

Homepage

https://bioconductor.org/packages/3.14/bioc/html/ACE.html

License

GPL-2

Recipe

/bioconductor-ace/meta.yaml

Uses segmented copy number data to estimate tumor cell percentage and produce copy number plots displaying absolute copy numbers.

package bioconductor-ace

Versions

1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-qdnaseq >=1.30.0,<1.31.0

• r-base >=4.1,<4.2.0a0

• r-ggplot2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ace

and update with:

conda update bioconductor-ace

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ace:<tag>

(see bioconductor-ace/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ace/README.html)