recipe bioconductor-ace

Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ACE.html

License:

GPL-2

Recipe:

/bioconductor-ace/meta.yaml

Uses segmented copy number data to estimate tumor cell percentage and produce copy number plots displaying absolute copy numbers.

package bioconductor-ace

Versions:

1.16.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-qdnaseq >=1.34.0,<1.35.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ace

and update with:

conda update bioconductor-ace

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ace:<tag>

(see bioconductor-ace/tags for valid values for <tag>)

Download stats

Link to this page

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