- recipe bioconductor-ace
Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing
- Homepage
- License
GPL-2
- Recipe
Uses segmented copy number data to estimate tumor cell percentage and produce copy number plots displaying absolute copy numbers.
- package bioconductor-ace¶
-
- Versions
1.12.0-0
,1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.0.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-qdnaseq
>=1.30.0,<1.31.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-ace
and update with:
conda update bioconductor-ace
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ace:<tag>
(see bioconductor-ace/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ace/README.html)