recipe bioconductor-affyhgu133aexpr

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/Affyhgu133aExpr.html

License:

GPL (>=2)

Recipe:

/bioconductor-affyhgu133aexpr/meta.yaml

Contains pre-built human (GPL96) database of gene expression profiles. The gene expression data was downloaded from NCBI GEO, preprocessed and normalized consistently. The biological context of each sample was recorded and manually verified based on the sample description in GEO.

package bioconductor-affyhgu133aexpr

(downloads) docker_bioconductor-affyhgu133aexpr

versions:
1.40.0-0,  1.38.0-0,  1.35.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0, 

1.40.0-0,  1.38.0-0,  1.35.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-2,  1.22.0-1,  1.20.0-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-affyhgu133aexpr

and update with::

   mamba update bioconductor-affyhgu133aexpr

To create a new environment, run:

mamba create --name myenvname bioconductor-affyhgu133aexpr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-affyhgu133aexpr:<tag>

(see `bioconductor-affyhgu133aexpr/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-affyhgu133aexpr/README.html)