recipe bioconductor-affymetrixdatatestfiles

Affymetrix Data Files (CEL, CDF, CHP, EXP, PGF, PSI) for Testing

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/AffymetrixDataTestFiles.html

License:

LGPL-2.1

Recipe:

/bioconductor-affymetrixdatatestfiles/meta.yaml

This package contains annotation data files and sample data files of Affymetrix file formats. The files originate from the Affymetrix' Fusion SDK distribution and other official sources.

package bioconductor-affymetrixdatatestfiles

(downloads) docker_bioconductor-affymetrixdatatestfiles

versions:
0.40.0-0,  0.38.0-0,  0.35.0-0,  0.32.0-1,  0.32.0-0,  0.30.0-0,  0.28.0-1,  0.28.0-0,  0.27.0-0, 

0.40.0-0,  0.38.0-0,  0.35.0-0,  0.32.0-1,  0.32.0-0,  0.30.0-0,  0.28.0-1,  0.28.0-0,  0.27.0-0,  0.26.0-0,  0.24.0-0,  0.22.0-1,  0.22.0-0,  0.20.0-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-affymetrixdatatestfiles

and update with::

   mamba update bioconductor-affymetrixdatatestfiles

To create a new environment, run:

mamba create --name myenvname bioconductor-affymetrixdatatestfiles

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-affymetrixdatatestfiles:<tag>

(see `bioconductor-affymetrixdatatestfiles/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-affymetrixdatatestfiles/README.html)