recipe bioconductor-affyplm

Methods for fitting probe-level models

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/affyPLM.html

License:

GPL (>= 2)

Recipe:

/bioconductor-affyplm/meta.yaml

Links:

biotools: affyplm

A package that extends and improves the functionality of the base affy package. Routines that make heavy use of compiled code for speed. Central focus is on implementation of methods for fitting probe-level models and tools using these models. PLM based quality assessment tools.

package bioconductor-affyplm

Versions:

1.74.0-0,  1.70.0-2,  1.70.0-1,  1.70.0-0,  1.68.0-0,  1.66.0-1,  1.66.0-0,  1.64.0-0,  1.62.0-0, 

1.74.0-0,  1.70.0-2,  1.70.0-1,  1.70.0-0,  1.68.0-0,  1.66.0-1,  1.66.0-0,  1.64.0-0,  1.62.0-0,  1.60.0-1,  1.58.0-0,  1.56.0-0,  1.54.0-0

Depends:

• bioconductor-affy >=1.76.0,<1.77.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-gcrma >=2.70.0,<2.71.0

• bioconductor-preprocesscore >=1.60.0,<1.61.0

• bioconductor-zlibbioc >=1.44.0,<1.45.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-affylmgui

• bioconductor-arrayqualitymetrics

• bioconductor-refplus

• bioconductor-mimager

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-affyplm

and update with:

conda update bioconductor-affyplm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-affyplm:<tag>

(see bioconductor-affyplm/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-affyplm/README.html)