recipe bioconductor-affyplm

A package that extends and improves the functionality of the base affy package. Routines that make heavy use of compiled code for speed. Central focus is on implementation of methods for fitting probe-level models and tools using these models. PLM based quality assessment tools.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/affyPLM.html

License

GPL (>= 2)

Recipe

/bioconductor-affyplm/meta.yaml

Links

biotools: affyplm

package bioconductor-affyplm

(downloads) docker_bioconductor-affyplm

Versions

1.58.0-0, 1.56.0-0, 1.54.0-0

Depends bioconductor-affy

>=1.60.0,<1.61.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-gcrma

>=2.54.0,<2.55.0

Depends bioconductor-preprocesscore

>=1.44.0,<1.45.0

Depends bioconductor-zlibbioc

>=1.28.0,<1.29.0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-affyplm

and update with:

conda update bioconductor-affyplm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-affyplm:<tag>

(see bioconductor-affyplm/tags for valid values for <tag>)