recipe bioconductor-affyrnadegradation

Analyze and correct probe positional bias in microarray data due to RNA degradation

Homepage

https://bioconductor.org/packages/3.11/bioc/html/AffyRNADegradation.html

License

GPL-2

Recipe

/bioconductor-affyrnadegradation/meta.yaml

Links

biotools: affyrnadegradation

The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.

package bioconductor-affyrnadegradation

(downloads) docker_bioconductor-affyrnadegradation

Versions

1.34.0-01.32.0-01.30.0-11.28.0-01.26.0-01.24.0-01.22.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-affyrnadegradation

and update with:

conda update bioconductor-affyrnadegradation

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-affyrnadegradation:<tag>

(see bioconductor-affyrnadegradation/tags for valid values for <tag>)