recipe bioconductor-alabaster

Umbrella for the Alabaster Framework






Umbrella for the alabaster suite, providing a single-line import for all alabaster.* packages. Installing this package ensures that all known alabaster.* packages are also installed, avoiding problems with missing packages when a staging method or loading function is dynamically requested. Obviously, this comes at the cost of needing to install more packages, so advanced users and application developers may prefer to install the required alabaster.* packages individually.

package bioconductor-alabaster

(downloads) docker_bioconductor-alabaster



depends bioconductor-alabaster.base:


depends bioconductor-alabaster.bumpy:


depends bioconductor-alabaster.mae:


depends bioconductor-alabaster.matrix:


depends bioconductor-alabaster.ranges:


depends bioconductor-alabaster.sce:




depends bioconductor-alabaster.spatial:


depends bioconductor-alabaster.string:


depends bioconductor-alabaster.vcf:


depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-alabaster

and update with::

   mamba update bioconductor-alabaster

To create a new environment, run:

mamba create --name myenvname bioconductor-alabaster

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-alabaster/tags`_ for valid values for ``<tag>``)

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