recipe bioconductor-amountain

A pure data-driven gene network, weighted gene co-expression network (WGCN) could be constructed only from expression profile. Different layers in such networks may represent different time points, multiple conditions or various species. AMOUNTAIN aims to search active modules in multi-layer WGCN using a continuous optimization approach.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/AMOUNTAIN.html

License

GPL (>= 2)

Recipe

/bioconductor-amountain/meta.yaml

Links

biotools: amountain, doi: 10.1101/056952

package bioconductor-amountain

(downloads) docker_bioconductor-amountain

Versions

1.10.0-0, 1.8.0-0, 1.6.0-0, 1.4.0-0, 1.2.0-0

Depends gsl

>=2.4,<2.5.0a0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-amountain

and update with:

conda update bioconductor-amountain

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-amountain:<tag>

(see bioconductor-amountain/tags for valid values for <tag>)