recipe bioconductor-amplican

Automated analysis of CRISPR experiments

Homepage

https://bioconductor.org/packages/3.11/bioc/html/amplican.html

License

GPL-3

Recipe

/bioconductor-amplican/meta.yaml

`amplican` performs alignment of the amplicon reads, normalizes gathered data, calculates multiple statistics (e.g. cut rates, frameshifts) and presents results in form of aggregated reports. Data and statistics can be broken down by experiments, barcodes, user defined groups, guides and amplicons allowing for quick identification of potential problems.

package bioconductor-amplican

(downloads) docker_bioconductor-amplican

Versions

1.10.0-01.8.0-01.6.2-01.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-amplican

and update with:

conda update bioconductor-amplican

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-amplican:<tag>

(see bioconductor-amplican/tags for valid values for <tag>)