recipe bioconductor-ancombc

Analysis of compositions of microbiomes with bias correction

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/ANCOMBC.html

License:

Artistic-2.0

Recipe:

/bioconductor-ancombc/meta.yaml

ANCOMBC is a package for normalizing the microbial observed abundance data due to unequal sampling fractions across samples, and identifying taxa (e.g. phyla, families, genera, species, etc.) that are differentially abundant with respect to the covariate of interest (e.g. study groups) between two or more groups of multiple samples.

package bioconductor-ancombc

Versions:

1.4.0-0,  1.2.0-0,  1.0.5-0,  1.0.0-2

Depends:

• bioconductor-microbiome >=1.16.0,<1.17.0

• bioconductor-phyloseq >=1.38.0,<1.39.0

• r-base >=4.1,<4.2.0a0

• r-mass

• r-nloptr

• r-rdpack

Required By:

• bioconductor-microbiomemarker

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ancombc

and update with:

conda update bioconductor-ancombc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ancombc:<tag>

(see bioconductor-ancombc/tags for valid values for <tag>)

Download stats

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