- recipe bioconductor-ancombc
Analysis of compositions of microbiomes with bias correction
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/ANCOMBC.html
- License:
Artistic-2.0
- Recipe:
ANCOMBC is a package for normalizing the microbial observed abundance data due to unequal sampling fractions across samples, and identifying taxa (e.g. phyla, families, genera, species, etc.) that are differentially abundant with respect to the covariate of interest (e.g. study groups) between two or more groups of multiple samples.
- package bioconductor-ancombc¶
-
- Versions:
1.4.0-0
,1.2.0-0
,1.0.5-0
,1.0.0-2
- Depends:
bioconductor-microbiome
>=1.16.0,<1.17.0
bioconductor-phyloseq
>=1.38.0,<1.39.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-ancombc
and update with:
conda update bioconductor-ancombc
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ancombc:<tag>
(see bioconductor-ancombc/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ancombc/README.html)