recipe bioconductor-animalcules

Interactive microbiome analysis toolkit






animalcules is an R package for utilizing up-to-date data analytics, visualization methods, and machine learning models to provide users an easy-to-use interactive microbiome analysis framework. It can be used as a standalone software package or users can explore their data with the accompanying interactive R Shiny application. Traditional microbiome analysis such as alpha/beta diversity and differential abundance analysis are enhanced, while new methods like biomarker identification are introduced by animalcules. Powerful interactive and dynamic figures generated by animalcules enable users to understand their data better and discover new insights.

package bioconductor-animalcules

(downloads) docker_bioconductor-animalcules


1.4.0-0, 1.2.0-0, 1.0.6-0

Required By


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-animalcules

and update with:

conda update bioconductor-animalcules

or use the docker container:

docker pull<tag>

(see bioconductor-animalcules/tags for valid values for <tag>)