recipe bioconductor-annaffy

Functions for handling data from Bioconductor Affymetrix annotation data packages. Produces compact HTML and text reports including experimental data and URL links to many online databases. Allows searching biological metadata using various criteria.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/annaffy.html

License

LGPL

Recipe

/bioconductor-annaffy/meta.yaml

Links

biotools: annaffy, doi: 10.1038/nmeth.3252

package bioconductor-annaffy

Versions

1.54.0-0, 1.52.0-0, 1.50.0-0, 1.48.0-0

Depends

• bioconductor-annotationdbi >=1.44.0,<1.45.0

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-go.db >=3.7.0,<3.8.0

• bioconductor-kegg.db >=3.2.0,<3.3.0

• r-base >=3.5.1,<3.5.2.0a0

• r-dbi

Required By

• bioconductor-a4base

• bioconductor-webbioc

• bioconductor-pgsea

• bioconductor-a4reporting

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-annaffy

and update with:

conda update bioconductor-annaffy

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-annaffy:<tag>

(see bioconductor-annaffy/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-annaffy/README.html)