recipe bioconductor-annotate

Using R enviroments for annotation.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/annotate.html

License

Artistic-2.0

Recipe

/bioconductor-annotate/meta.yaml

Links

biotools: annotate, doi: 10.1038/nmeth.3252

package bioconductor-annotate

Versions

1.62.0-1, 1.60.1-0, 1.60.0-0, 1.58.0-0, 1.56.0-0, 1.54.0-0, 1.50.0-1, 1.50.0-0, 1.48.0-1, 1.48.0-0, 1.46.1-0

Depends

• bioconductor-annotationdbi >=1.46.0,<1.47.0

• bioconductor-biobase >=2.44.0,<2.45.0

• bioconductor-biocgenerics >=0.30.0,<0.31.0

• r-base >=3.6,<3.7.0a0

• r-dbi

• r-rcurl

• r-xml

• r-xtable

Required By

• bioconductor-geneplotter

• bioconductor-idiogram

• bioconductor-qpgraph

• bioconductor-reportingtools

• bioconductor-rpsixml

• bioconductor-drugvsdisease

• bioconductor-semdist

• bioconductor-phenotest

• bioconductor-mgfm

• bioconductor-systempiper

• bioconductor-tigre

• bioconductor-doqtl

• bioconductor-scisi

• bioconductor-genefilter

• bioconductor-gcmapweb

• bioconductor-pathwaysplice

• bioconductor-cner

• bioconductor-lumi

• bioconductor-gosim

• bioconductor-sampleclassifier

• bioconductor-gseabase

• bioconductor-macat

• bioconductor-mgfr

• bioconductor-preda

• bioconductor-debrowser

• bioconductor-geneanswers

• bioconductor-globaltest

• bioconductor-methyanalysis

• bioconductor-chromheatmap

• bioconductor-pcpheno

• bioconductor-gcmap

• bioconductor-cafe

• bioconductor-splicegear

• bioconductor-categorycompare

• bioconductor-globalancova

• bioconductor-mvgst

• bioconductor-predasampledata

• bioconductor-category

• bioconductor-neve2006

• bioconductor-methylumi

• bioconductor-mlinterfaces

• bioconductor-codelink

• bioconductor-gostats

• bioconductor-mineica

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-annotate

and update with:

conda update bioconductor-annotate

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-annotate:<tag>

(see bioconductor-annotate/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-annotate/README.html)