recipe bioconductor-annotationfilter

Facilities for Filtering Bioconductor Annotation Resources

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/AnnotationFilter.html

License:

Artistic-2.0

Recipe:

/bioconductor-annotationfilter/meta.yaml

This package provides class and other infrastructure to implement filters for manipulating Bioconductor annotation resources. The filters will be used by ensembldb, Organism.dplyr, and other packages.

package bioconductor-annotationfilter

(downloads) docker_bioconductor-annotationfilter

versions:
1.26.0-0,  1.24.0-0,  1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0, 

1.26.0-0,  1.24.0-0,  1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-0

depends bioconductor-genomicranges:

>=1.54.0,<1.55.0

depends r-base:

>=4.3,<4.4.0a0

depends r-lazyeval:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-annotationfilter

and update with::

   mamba update bioconductor-annotationfilter

To create a new environment, run:

mamba create --name myenvname bioconductor-annotationfilter

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-annotationfilter:<tag>

(see `bioconductor-annotationfilter/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-annotationfilter/README.html)