recipe bioconductor-annotationhubdata

Transform public data resources into Bioconductor Data Structures

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/AnnotationHubData.html

License:

Artistic-2.0

Recipe:

/bioconductor-annotationhubdata/meta.yaml

Links:

biotools: annotationhubdata, doi: 10.1038/nmeth.3252

These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.

package bioconductor-annotationhubdata

Versions:

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.1-0,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0, 

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.1-0,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0,  1.10.3-0,  1.8.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-annotationforge >=1.40.0,<1.41.0

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-bioccheck >=1.34.0,<1.35.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocviews >=1.66.0,<1.67.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-graph >=1.76.0,<1.77.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-organismdbi >=1.40.0,<1.41.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-biocmanager

• r-dbi

• r-futile.logger >=1.3.0

• r-jsonlite

• r-rcurl

• r-rsqlite

• r-xml

Required By:

• bioconductor-eupathdb

• bioconductor-ahensdbs

• bioconductor-experimenthubdata

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-annotationhubdata

and update with:

conda update bioconductor-annotationhubdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-annotationhubdata:<tag>

(see bioconductor-annotationhubdata/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-annotationhubdata/README.html)