recipe bioconductor-annotationhubdata

These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/AnnotationHubData.html

License

Artistic-2.0

Recipe

/bioconductor-annotationhubdata/meta.yaml

Links

biotools: annotationhubdata, doi: 10.1038/nmeth.3252

package bioconductor-annotationhubdata

(downloads) docker_bioconductor-annotationhubdata

Versions

1.12.0-0, 1.10.3-0, 1.8.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-annotationforge

>=1.24.0,<1.25.0

Depends bioconductor-annotationhub

>=2.14.0,<2.15.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biocviews

>=1.50.0,<1.51.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicfeatures

>=1.34.0,<1.35.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-organismdbi

>=1.24.0,<1.25.0

Depends bioconductor-rbiopaxparser

>=2.22.0,<2.23.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-rtracklayer

>=1.42.0,<1.43.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-biocmanager

Depends r-dbi

Depends r-futile.logger

>=1.3.0

Depends r-jsonlite

Depends r-rcurl

Depends r-rsqlite

Depends r-xml

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-annotationhubdata

and update with:

conda update bioconductor-annotationhubdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-annotationhubdata:<tag>

(see bioconductor-annotationhubdata/tags for valid values for <tag>)