- recipe bioconductor-annotationhubdata
Transform public data resources into Bioconductor Data Structures
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/AnnotationHubData.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: annotationhubdata, doi: 10.1038/nmeth.3252
These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.
- package bioconductor-annotationhubdata¶
-
- Versions:
1.28.0-0
,1.24.0-0
,1.22.0-0
,1.20.1-0
,1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.12.0-0
,1.28.0-0
,1.24.0-0
,1.22.0-0
,1.20.1-0
,1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.12.0-0
,1.10.3-0
,1.8.0-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-annotationforge
>=1.40.0,<1.41.0
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-bioccheck
>=1.34.0,<1.35.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocviews
>=1.66.0,<1.67.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-graph
>=1.76.0,<1.77.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-organismdbi
>=1.40.0,<1.41.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
r-futile.logger
>=1.3.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-annotationhubdata
and update with:
conda update bioconductor-annotationhubdata
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-annotationhubdata:<tag>
(see bioconductor-annotationhubdata/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-annotationhubdata/README.html)