recipe bioconductor-annotationtools

Annotate microarrays and perform cross-species gene expression analyses using flat file databases

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/annotationTools.html

License:

GPL

Recipe:

/bioconductor-annotationtools/meta.yaml

Links:

biotools: annotationtools

Functions to annotate microarrays, find orthologs, and integrate heterogeneous gene expression profiles using annotation and other molecular biology information available as flat file database (plain text files).

package bioconductor-annotationtools

(downloads) docker_bioconductor-annotationtools

versions:
1.76.0-0,  1.74.0-0,  1.72.0-0,  1.68.0-0,  1.66.0-0,  1.64.0-1,  1.64.0-0,  1.62.0-0,  1.60.0-0, 

1.76.0-0,  1.74.0-0,  1.72.0-0,  1.68.0-0,  1.66.0-0,  1.64.0-1,  1.64.0-0,  1.62.0-0,  1.60.0-0,  1.58.0-1,  1.56.0-0,  1.54.0-0,  1.52.0-0,  1.50.0-0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-annotationtools

and update with::

   mamba update bioconductor-annotationtools

To create a new environment, run:

mamba create --name myenvname bioconductor-annotationtools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-annotationtools:<tag>

(see `bioconductor-annotationtools/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-annotationtools/README.html)