recipe bioconductor-anvilworkflow

Run workflows implemented in Terra/AnVIL workspace

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/AnVILWorkflow.html

License:

Artistic-2.0

Recipe:

/bioconductor-anvilworkflow/meta.yaml

The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The main cloud-based genomics platform deported by the AnVIL project is Terra. The AnVILWorkflow package allows remote access to Terra implemented workflows, enabling end-user to utilize Terra/ AnVIL provided resources - such as data, workflows, and flexible/scalble computing resources - through the conventional R functions.

package bioconductor-anvilworkflow

versions:

1.6.0-0,  1.2.0-0,  1.0.1-0

depends bioconductor-anvil:

>=1.18.0,<1.19.0

depends bioconductor-anvilbase:

>=1.0.0,<1.1.0

depends bioconductor-anvilgcp:

>=1.0.0,<1.1.0

depends r-base:

>=4.4,<4.5.0a0

depends r-dplyr:

depends r-httr:

depends r-jsonlite:

depends r-plyr:

depends r-rlang:

depends r-stringr:

depends r-tibble:

depends r-tidyr:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-anvilworkflow

and update with::

   mamba update bioconductor-anvilworkflow

To create a new environment, run:

mamba create --name myenvname bioconductor-anvilworkflow

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-anvilworkflow:<tag>

(see `bioconductor-anvilworkflow/tags`_ for valid values for ``<tag>``)

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