recipe bioconductor-apl

Association Plots

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/APL.html

License:

GPL (>= 3)

Recipe:

/bioconductor-apl/meta.yaml

APL is a package developed for computation of Association Plots (AP), a method for visualization and analysis of single cell transcriptomics data. The main focus of APL is the identification of genes characteristic for individual clusters of cells from input data. The package performs correspondence analysis (CA) and allows to identify cluster-specific genes using Association Plots. Additionally, APL computes the cluster-specificity scores for all genes which allows to rank the genes by their specificity for a selected cell cluster of interest.

package bioconductor-apl

Versions:

1.2.0-0

Depends:

• bioconductor-org.hs.eg.db >=3.16.0,<3.17.0

• bioconductor-org.mm.eg.db >=3.16.0,<3.17.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-topgo >=2.50.0,<2.51.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

• r-ggrepel

• r-magrittr

• r-plotly

• r-reticulate

• r-rlang

• r-seurat

• r-viridislite

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-apl

and update with:

conda update bioconductor-apl

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-apl:<tag>

(see bioconductor-apl/tags for valid values for <tag>)

Download stats

Link to this page

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